I can sympathise with you, I've been getting the similar pains but in my right knee. I read on the net about moving the cleats forward a few mm's might help. I did this and could hardly walk the next day, knee was really sore.
Went to the doctors who said to rest and she'd book me a physio. A week off the bike and the gym helped, then started back at the gym and had my first ride back on the bike two weeks later. Moved cleats back around 5mm's now which seems to have helped. Had a ride out today and knee seems ok, but can feel a bit of pain on the MCL (medial collateral ligament). I recon even when I get a physio appointment they'll be no help unless they are a cycling/sports enthusiast. Must save up for a private physio who's sports specific.